| Software | Description |
|---|---|
| pFind | Peptide and protein identification from tandem mass spectra. |
| pLink | Chemically cross-linked proteins or protein complexes analysis using mass spectrometry. |
| pGlyco | Intact glycopeptides analysis using mass spectrometry. |
| pNovo | De novo sequencing of peptides from MS/MS data without any databases. |
| pChem | A modification-centric assessment tool for performance of chemoproteomic probes. |
| pTop | Intact protein analysis using mass spectrometry. |
| pQuant | Peptide and protein quantitation analysis. |
| pAnno | Proteogenomic analysis tools based on the MS/MS searching results. |
| pLabel | Mass spectral peak labeling tool developed for proteomics research. |
| pXtract | Text-plain spectra extraction from vendor's MS/MS data formats. |
| pParse | Extraction and Calibration of monoisotopic peaks of precursors in MS/MS datasets. |
| DBReducer | Database reduction method to facilitate large-scale database search in proteomics. |